CDS

Accession Number TCMCG016C27237
gbkey CDS
Protein Id OMO53144.1
Location join(12059..12186,12510..12656,12744..12965,13057..13234,13339..13609,13707..13809,13888..14012,14108..14186,14268..14412,14650..14810,14908..15028,15120..15317)
Organism Corchorus capsularis
locus_tag CCACVL1_28857

Protein

Length 625aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA215142; BioSample:SAMN03290679;
db_source AWWV01015292.1
Definition Nucleic acid binding, tRNA/helicase-type [Corchorus capsularis]
Locus_tag CCACVL1_28857

EGGNOG-MAPPER Annotation

COG_category L
Description Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses
KEGG_TC -
KEGG_Module M00288        [VIEW IN KEGG]
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko00002        [VIEW IN KEGG]
ko03000        [VIEW IN KEGG]
ko03032        [VIEW IN KEGG]
ko03400        [VIEW IN KEGG]
KEGG_ko ko:K07466        [VIEW IN KEGG]
EC -
KEGG_Pathway ko03030        [VIEW IN KEGG]
ko03420        [VIEW IN KEGG]
ko03430        [VIEW IN KEGG]
ko03440        [VIEW IN KEGG]
ko03460        [VIEW IN KEGG]
map03030        [VIEW IN KEGG]
map03420        [VIEW IN KEGG]
map03430        [VIEW IN KEGG]
map03440        [VIEW IN KEGG]
map03460        [VIEW IN KEGG]
GOs GO:0000003        [VIEW IN EMBL-EBI]
GO:0000228        [VIEW IN EMBL-EBI]
GO:0000278        [VIEW IN EMBL-EBI]
GO:0000723        [VIEW IN EMBL-EBI]
GO:0000724        [VIEW IN EMBL-EBI]
GO:0000725        [VIEW IN EMBL-EBI]
GO:0000781        [VIEW IN EMBL-EBI]
GO:0000784        [VIEW IN EMBL-EBI]
GO:0000785        [VIEW IN EMBL-EBI]
GO:0000790        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003677        [VIEW IN EMBL-EBI]
GO:0003697        [VIEW IN EMBL-EBI]
GO:0003723        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005657        [VIEW IN EMBL-EBI]
GO:0005662        [VIEW IN EMBL-EBI]
GO:0005694        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006259        [VIEW IN EMBL-EBI]
GO:0006260        [VIEW IN EMBL-EBI]
GO:0006261        [VIEW IN EMBL-EBI]
GO:0006268        [VIEW IN EMBL-EBI]
GO:0006278        [VIEW IN EMBL-EBI]
GO:0006279        [VIEW IN EMBL-EBI]
GO:0006281        [VIEW IN EMBL-EBI]
GO:0006302        [VIEW IN EMBL-EBI]
GO:0006310        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006974        [VIEW IN EMBL-EBI]
GO:0006996        [VIEW IN EMBL-EBI]
GO:0007004        [VIEW IN EMBL-EBI]
GO:0007049        [VIEW IN EMBL-EBI]
GO:0007063        [VIEW IN EMBL-EBI]
GO:0007088        [VIEW IN EMBL-EBI]
GO:0007346        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009058        [VIEW IN EMBL-EBI]
GO:0009059        [VIEW IN EMBL-EBI]
GO:0009314        [VIEW IN EMBL-EBI]
GO:0009411        [VIEW IN EMBL-EBI]
GO:0009416        [VIEW IN EMBL-EBI]
GO:0009628        [VIEW IN EMBL-EBI]
GO:0009889        [VIEW IN EMBL-EBI]
GO:0009891        [VIEW IN EMBL-EBI]
GO:0009893        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010224        [VIEW IN EMBL-EBI]
GO:0010556        [VIEW IN EMBL-EBI]
GO:0010557        [VIEW IN EMBL-EBI]
GO:0010564        [VIEW IN EMBL-EBI]
GO:0010604        [VIEW IN EMBL-EBI]
GO:0010638        [VIEW IN EMBL-EBI]
GO:0010639        [VIEW IN EMBL-EBI]
GO:0010833        [VIEW IN EMBL-EBI]
GO:0010948        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0018130        [VIEW IN EMBL-EBI]
GO:0019219        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0019438        [VIEW IN EMBL-EBI]
GO:0022402        [VIEW IN EMBL-EBI]
GO:0022414        [VIEW IN EMBL-EBI]
GO:0030894        [VIEW IN EMBL-EBI]
GO:0031323        [VIEW IN EMBL-EBI]
GO:0031325        [VIEW IN EMBL-EBI]
GO:0031326        [VIEW IN EMBL-EBI]
GO:0031328        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032200        [VIEW IN EMBL-EBI]
GO:0032204        [VIEW IN EMBL-EBI]
GO:0032206        [VIEW IN EMBL-EBI]
GO:0032210        [VIEW IN EMBL-EBI]
GO:0032212        [VIEW IN EMBL-EBI]
GO:0032392        [VIEW IN EMBL-EBI]
GO:0032508        [VIEW IN EMBL-EBI]
GO:0032879        [VIEW IN EMBL-EBI]
GO:0032880        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0032993        [VIEW IN EMBL-EBI]
GO:0033043        [VIEW IN EMBL-EBI]
GO:0033044        [VIEW IN EMBL-EBI]
GO:0033045        [VIEW IN EMBL-EBI]
GO:0033046        [VIEW IN EMBL-EBI]
GO:0033047        [VIEW IN EMBL-EBI]
GO:0033048        [VIEW IN EMBL-EBI]
GO:0033260        [VIEW IN EMBL-EBI]
GO:0033554        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034645        [VIEW IN EMBL-EBI]
GO:0034654        [VIEW IN EMBL-EBI]
GO:0035861        [VIEW IN EMBL-EBI]
GO:0042162        [VIEW IN EMBL-EBI]
GO:0042592        [VIEW IN EMBL-EBI]
GO:0043047        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043228        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043232        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0043565        [VIEW IN EMBL-EBI]
GO:0043596        [VIEW IN EMBL-EBI]
GO:0043601        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044249        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044271        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044427        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044454        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0044786        [VIEW IN EMBL-EBI]
GO:0045786        [VIEW IN EMBL-EBI]
GO:0045839        [VIEW IN EMBL-EBI]
GO:0045875        [VIEW IN EMBL-EBI]
GO:0045930        [VIEW IN EMBL-EBI]
GO:0045935        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0048518        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0048522        [VIEW IN EMBL-EBI]
GO:0048523        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051052        [VIEW IN EMBL-EBI]
GO:0051054        [VIEW IN EMBL-EBI]
GO:0051098        [VIEW IN EMBL-EBI]
GO:0051101        [VIEW IN EMBL-EBI]
GO:0051128        [VIEW IN EMBL-EBI]
GO:0051129        [VIEW IN EMBL-EBI]
GO:0051130        [VIEW IN EMBL-EBI]
GO:0051171        [VIEW IN EMBL-EBI]
GO:0051173        [VIEW IN EMBL-EBI]
GO:0051276        [VIEW IN EMBL-EBI]
GO:0051321        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0051726        [VIEW IN EMBL-EBI]
GO:0051783        [VIEW IN EMBL-EBI]
GO:0051784        [VIEW IN EMBL-EBI]
GO:0051983        [VIEW IN EMBL-EBI]
GO:0051985        [VIEW IN EMBL-EBI]
GO:0060249        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0060341        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0065008        [VIEW IN EMBL-EBI]
GO:0065009        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0070034        [VIEW IN EMBL-EBI]
GO:0071103        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0071897        [VIEW IN EMBL-EBI]
GO:0071922        [VIEW IN EMBL-EBI]
GO:0071923        [VIEW IN EMBL-EBI]
GO:0080090        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0090734        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:0098687        [VIEW IN EMBL-EBI]
GO:0098847        [VIEW IN EMBL-EBI]
GO:0106111        [VIEW IN EMBL-EBI]
GO:0106112        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901362        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1901576        [VIEW IN EMBL-EBI]
GO:1902969        [VIEW IN EMBL-EBI]
GO:1903046        [VIEW IN EMBL-EBI]
GO:1903047        [VIEW IN EMBL-EBI]
GO:1903827        [VIEW IN EMBL-EBI]
GO:1903828        [VIEW IN EMBL-EBI]
GO:1904356        [VIEW IN EMBL-EBI]
GO:1904358        [VIEW IN EMBL-EBI]
GO:1905405        [VIEW IN EMBL-EBI]
GO:1905412        [VIEW IN EMBL-EBI]
GO:1905634        [VIEW IN EMBL-EBI]
GO:2000112        [VIEW IN EMBL-EBI]
GO:2000278        [VIEW IN EMBL-EBI]
GO:2000573        [VIEW IN EMBL-EBI]
GO:2001251        [VIEW IN EMBL-EBI]
GO:2001252        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGCGAAATCAGTAACCCCAGATGCGATATCGACCATACTGGCCAACCCATCTCCGGATTCTTCTTCAGATCTCCCTGAGATCATCGTTCAGGTCTTGGATCTCAAGCTCACCGGCAATCGTTACACGTTTAATGCAAGTGATGGGAAGATGAAAGTGAGAGCTATATTTCCATCAAACATGTCGTCTGAGATCATTGCAGGCAGTATCCAGAACAAGGGTCTTGTAAGGATTCTCCATTATACCCTCAATGACATCCCCAACAAATCAGAAAAGTATTTGATTGTGATCAAATGTGAGGTAGTGGCCCCTGCACTTGAGACAGAAATCACAGCTGAAGTCAATACTGAGGAATCTGAAGTTGTCTTAAAGAAACCCAAGCTTGAAAATGAGATAAAAGATGAAGTCAAAACAGAAGGGGCTGGTATTGTTTTGAAGCCAAAGCAGGAAATGGTTTCTAAATCTGCCGCTCAAATCATATATGAACAGCGGGAAAATATGGCTCCATCAACCCGAATGGCAATGTCAAGAAGGGTGCATCCTCTTGTTTCATTGAATCCTTACCAAGGCAACTGGACGATTAAAGTTAGGCTTACAAGCAAGGGAAATATGCGTACGTATAAGAATGCTAGGGGAGAAGGTTGTGTTTTCAATGTGGAGTTGACAGATGAAGATGGTACACAAATACAAGCCACCATGTTTAATGAAGCTGCTAGAAAGTTCTTTGACAAGTTTCAACTAGGAAAGGTCTATTACATATCTAAGGGGACACTCAAACTTGCAAACAAGCAGTTTAAGACTGTGAAGAATGATTATGAAATGACATTGAATGAGAATTCAATGGTGGAAGAGGCTTCTAATGAGGAATCATTTATTCCCGAAACTAAGTTCAACTTTGTGCCCATTGATCAGTTAGGTCCTTATGTTAATGGAAGGGAACTTGTTGATATCATTGGAGTTGTTCAGAGTGTTGGCGCTATATCAAATGTTAAAAGGAAGATTGACAATGAGAATATTCCAAAGCGAGATATGACTGTTGCAGATGATACGAAGAGGACAGTGGTGGTTTCTCTGTGGAATGAACTTGCAAACACTGTAGGCCAGGAATTGTTTGACATGGCTGATAAATCCCCTATAGTTGCTATAAAATCACTCAAAGTTGGTGACTTTCAAGGTGTATCTCTGTCAACATTGGGCAAAAGCACAGTACTGATTAATCCAGATATACCCGAAGCAAAGAAGTTGAAAGCTTGGTATGATTCTGAAGGGAAAGTGAGCTCTATGGCCTCTATTGGCTCAGGTTTGAGTCCTTCATCCAAGGGAGGAGCAAGATCTATGTACAGTGATAGGATTTCCCTTTCTCATATTACCGGTAACCCATCTTTGGGTGAAGATAAGCCTGCATTTTTCAGCATTAAGGCCTTTATCAGCTTGATCAAGCCTGATCAGGCAATGTGGTACCGTGCCTGCAAAACTTGCAACAAGAAAGTAACTGAAGCTATTGGATCAGGTTATTGGTGTGAAGGATGCCAGAAGAATGATGATGAGTGCAGTTTAAGATACATTATGGTGTCAAAGATTTCTGATGCAAGTGGTGAGGCTTGGGTTTCTGCCTTCAATGAAGAAGCAGAGAGGATTGTTGGATGCCCTGCTGATGAACTTGATAAACTAAAATCAAATGAAGAAGGTAATGCATACCAACAGAAGTTGAAGGATGCTACTTGGGCTCGTCATCTTTTTCGAGTCAGTGTTACTCAGAATGAGTATAATAATGAGAAGCGGCAAAGGATAACAGTCAGGGCAGTTGCTCCAATCGACTTTGCTGAGGAATCCAGATTTTTGCTTGAAGAGATCAAGAAGATGAGAAGTACTCAGTAG
Protein:  
MAKSVTPDAISTILANPSPDSSSDLPEIIVQVLDLKLTGNRYTFNASDGKMKVRAIFPSNMSSEIIAGSIQNKGLVRILHYTLNDIPNKSEKYLIVIKCEVVAPALETEITAEVNTEESEVVLKKPKLENEIKDEVKTEGAGIVLKPKQEMVSKSAAQIIYEQRENMAPSTRMAMSRRVHPLVSLNPYQGNWTIKVRLTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFFDKFQLGKVYYISKGTLKLANKQFKTVKNDYEMTLNENSMVEEASNEESFIPETKFNFVPIDQLGPYVNGRELVDIIGVVQSVGAISNVKRKIDNENIPKRDMTVADDTKRTVVVSLWNELANTVGQELFDMADKSPIVAIKSLKVGDFQGVSLSTLGKSTVLINPDIPEAKKLKAWYDSEGKVSSMASIGSGLSPSSKGGARSMYSDRISLSHITGNPSLGEDKPAFFSIKAFISLIKPDQAMWYRACKTCNKKVTEAIGSGYWCEGCQKNDDECSLRYIMVSKISDASGEAWVSAFNEEAERIVGCPADELDKLKSNEEGNAYQQKLKDATWARHLFRVSVTQNEYNNEKRQRITVRAVAPIDFAEESRFLLEEIKKMRSTQ